Research on an inventory of damage to coastal and marine ecosystems of the Riau Islands was carried out in the waters of the Berakit Village of Bintan Regency and Pulau Pasir Batam City. The purpose of this study was to obtain data on the status and condition of damage to seagrass coastal marine ecosystems and coral reefs in the two locations. The research period is from May to July 2019. The research method uses 'quadrant line transect' and Underwater Photo Transect and GIS analysis. Distribution of seagrass ecosystems 981.65 Ha, coral reefs 4291.73 Ha in Bintan Regency and Batam City. Berakit Beach seagrass cover has an average of 36.55% in the damaged or less rich / unhealthy category, while 71.02% in the Sand Island is in the dense or rich / healthy category. For live coral cover, Berakit Beach is 42.87% of medium condition category, while Pasir Island has an average of 1-2% of damaged condition category.

Coastal areas and sea have the potential biological resources large enough, because supported by three main ecosystem the ecosystem mangrove, seagrass beds and coral reefs. To maintain the existence of the ecosystem, control in coastal areas need to conducted one of them is inventory damage ecosystem especially ecosystem coral reefs. On the island of Bungkutoko lack or information on the coral reefs ecosystem is the island Barrang Lompo in addition the information and data on the ecosystem.  The purpose of this research is to get data teachers’ marital status and a condition of damage the ecosystem to coral reefs as a second the island. The research results obtained, a covering of coral reef island Bungkutoko depth 5m and 10m namely 36,47% and 41,67% category ‘being’. The island Barrang Lompo station 1 the depth of 5m and 10m namely 38,67% and 42,53% category ‘being’, station 2  covering 23,27% category ‘broken’. To scattery if coral reefs Bungkutoko island 231.31 ha, the Barrang Lompo island 127.47 ha. The level of damage/index mortalities on the island of Bungkutoko depth 5m and 10m namely 0,5593% and 0,6201% category ‘being’. The island Barrang Lompo station 1 depth 5m and 10m namely 0,6011% and 0,5504% category ‘being’, station 2 the level of damage/index mortalities 0,7326% category ‘high’.